AT5G38820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.863 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane amino acid transporter family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative amino acid transporter. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G30390.2); Has 4324 Blast hits to 4257 proteins in 375 species: Archae - 16; Bacteria - 268; Metazoa - 1444; Fungi - 800; Plants - 936; Viruses - 5; Other Eukaryotes - 855 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15543481..15545182 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49681.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.90 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.69 | ||||||||||||||||||||||||||||||||||||
| Length | 456 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENLDEIRTD IVESTAPLLQ ESSSESNGGG EFNGASFSGA VFNLATTIIG AGIMALPATM KILGLIPGIT IIVLMAFLTD ASIEFLLRFS NIGNQRSYGG 101: VMDDSFGKCG RIMLQVSILV SNIGVLIVYM IIIGDVLAGK NEYGIHHAGM LEGWFGISWW NRRTFVLLVT TLTVFAPLTC FKRIDSLRFT SAISVALAVV 201: FLVITAGITI IKLFTDGLMM PRLLPNVTDL SSFWKLFTVV PVLVNAYICH YNVHSIQNEL EDPSRIKPVV RSALAMCSSV YVMTSLFGYL LFGDGTLDDV 301: LANFDTDLGI PFGSVLNDAV RFSYAAHLML VFPVVFYPLR INIDGLIFPT APPLTSSESD LRFGSITAGL IAVIFLGANF IPSIWDAFQF TGATAAVCIG 401: FIFPAAVILK DRHNQATKRD KTIAICMIVL AVFSNAIAIY SDAYALFKKH TYVYPI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)