AT5G38780.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.988 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G38100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:15530085..15531463 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 41008.00 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.59 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||
Length | 361 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSTSSQSYPM SGGDDQHSYI HNSSYQKAGI DGVQEKARQY ILENLDLLNM NPNLSTFTIA DFGCSIGPNT FHAVQNIIDI VKLKHLKESQ EDSRVAPLEF 101: QVYFNDLPNN DFNTLFRTQP PSSKQEYFSV GVPGSFYGRV LPRNSIHIGN TSFTTHWLSK VPEEVCDKNS LAWNKNYIHC NNLIEEVTEA YKVQFEKDMG 201: VFLKARAEEL VPGGLMITLG QCLPDGVAMY ETWSGIVKDT IGDCLQDMAT LGVTTEEKIE MFNLPVYFPQ VSELKGAIEQ NIRFTIEMME IVSHPLEAVQ 301: LSNNFITSMY RAILSTVIER HFGGSVVDEL FRQFAKKLSE HPIDFEKCKK QMVYHIVLKR K |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)