AT5G38500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF313) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT5G38490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:15416018..15417253 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47395.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.35 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||
| Length | 411 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSGKDMWSR LCLLAETVVM AAEEEEQRRR LLAEKREDSK SQKKTVSEED DSEKRFLSHV PRKKRSSLVK RQQKPNGVST SSSSLPDLNQ IPIDYETETK 101: QNPSFIERLV CDEEQRVKKG KSRIIWEEEE EADEDSEKRL FEKNLMKFVG HSQQQQKFET LNGASSSSSF LNLRCYEASL FLDYNTVESE KTETKVLPNP 201: NYQSSSPSSC LTENDTSRKR RAVEQRKSGK VKKVKVSPLP RLSTETPEWV FQAMGHMNAD AETPKLIFER TLFKSDVNSN LSRLLIPFQK LIRNDFLTPE 301: ECRAMQEDKD KDDEDISVGT ILVCQAKQED EDKDDEDIGA GTILVNQRFK MWGLRFKIWG MEKDSGHGTL NYILNWDWND VVKGNSLKAG DNIGLWTFRC 401: RGVLCFALDT W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)