AT5G38344.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.473 vacuole 0.262 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Toll-Interleukin-Resistance (TIR) domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G38340.1); Has 1642 Blast hits to 1560 proteins in 51 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 1638; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15325950..15326591 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24230.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.99 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||
| Length | 213 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSSFLSGFC AAAITFFTLF GTIYFMFYRK GKSHQENKTI ASSLISISST PSSLPRKRKH DVFPSFHGAD VRKTFLAHIL KEFKGKGVVP FIDNDIERSK 101: SIGPELIEAI RGSKIAIVLL SRNYASSSWC LNELVEIMKC REQLGQTVMT IFYDVDPTDV KKQTGDFGKV FKKTCKGKPK EEIKRWQKVL EDVATIAGEH 201: SRNWLAFWIY ILL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)