AT5G38190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G32010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15234188..15237906 | ||||||||||||||||||||
| Molecular Weight (calculated) | 106785.00 Da | ||||||||||||||||||||
| IEP (calculated) | 8.82 | ||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||
| Length | 953 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSSSPNNSV DSYIRERTSS DLSGKKSPSI GWSEESSRHS VGSSTHRGKS AEVPSSGIDR REISAVRDRV PFSSRVPTVV PSLRDDTDSD GAGNRYADDE 101: RESADENVSG ESRKNEMVDL GPTTSTRESV GRTTDFCLLP GPLTIRIPRD TDRPSDCPEG FICLFEGFFT ETGLRFPIPD FLMRFCRNRQ IAISQLTVAS 201: IRTAACLQML CARCGIPLSV ELMEELTSFS KVPHKLGQHY ISSVRGFKIL ENEPSKTRDW LGGYFYAKVD RNLVEDPSAE TLREQAPIDW KQVPCLKHKK 301: QNKRKPQKQK SSARPKKMSG ENVNLATLMR EKRARKEAES KPRLAIVDKT HEDKARLDVA EKNRKGHEDK TKKGTSGAER RDVTDVTRVD KARPITVGQK 401: GSSGRSVDRE RSGPDTFGSK RPCSSKEVAP ALDKRRRIGS GDVDLSAGPR LLAIADHSFR YEYKVRDSPF SADRVECARF LRKNDVLFST PPEDNMCAWQ 501: AVWANNLLIS RYDRNLRSAR EKILVLEGKL KNAERTIADN NQQAKAGLEE LKALKKETVV LKAERSKEAA TLENVLRQQT LLEARLAEEK EIFWRFREEK 601: FAEEMRRRMH AQATGTLSCL KFLADEDKIP IPASTFEEFE EWKEKIDAFN VTELVNGGRV ITPVAPHGST ENVQGSEESP FRINQFGSKL GVLAACEIDP 701: ITEFFTDPKL AALVSAGVKK AIVTISDDEP AAVITTEDGP VPASHAETAP TIGDSSRVTP NEATVHCKES VRRLVQGVSR GTSSDSDDEL DSSSTSIRGY 801: FGCPRRDRSP SPICVVEDRV IRRPALPVGE PLYPWRRPPL IAASPSFTPV GRDFVPGSVK YPADLLRHLH PEEAARFRYW FRTLEGQHRA YCRRHAELLR 901: MMQEMELGMR RLEADPKDWE RFGLGKLNPL PPFLRAYCRA KLHEDEASSS RGP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)