AT5G37415.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AGAMOUS-like 105 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a MADS-box gene AGL105 (AGAMOUS-LIKE 105). Note that previous reports (Plant Cell 2003,15:1538; PNAS 2003, 100:13407) have incorrectly named AT5G37420 as AGL105. Current nomenclature is based on Plant Cell 2003, 15:1538 where the GenBank accession number given for AGL105 is AY141227 (Supplemental Table 3), which corresponds to AT5G37415. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AGAMOUS-like 105 (AGL105); FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 81 (TAIR:AT5G39750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:14839047..14840301 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37290.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.74 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||
| Length | 316 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRDPDIVQNT RSLILLRVLT HEKLIQSHRY FFVGWIHKNL SRFRRKIRRR FLHCDFSGFG FFPRRFLFGF VLEKMDHLQE SFRGSELCIL CDIEACVIYY 101: GPDGELKTWP KEREKVEDIA LRYSQLNEAL RRKKSVTLYD FLNKKKDKTN LEKKAMITDN DDLKTCLKNV NVLKSPIADH YFNDQISQLI QSLEPHVSKV 201: QERIRFVESQ KHKETKLDHQ SLASIYSLNQ SLNPSQFTLF LYNHGDNTMS QIPNMFMNNN NFQHSFVSNT QDYSALQESV NNNYGLMPNV LCGYDQNLFT 301: SDITNNNLLI DNSMYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)