AT5G37370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PRP38 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATSRL1; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037); Has 24000 Blast hits to 13040 proteins in 580 species: Archae - 8; Bacteria - 803; Metazoa - 13736; Fungi - 3156; Plants - 2052; Viruses - 103; Other Eukaryotes - 4142 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:14812845..14815988 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45859.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.09 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.18 | ||||||||||||||||||||||||||||||||
| Length | 393 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEIQSNGRA YESLLEKVLS MNILSSDYFK ELYGLKTYHE VIDEIYNQVN HVEPWMGGNC RGPSTAYCLL YKFFTMKLTV KQMHGLLKHT DSPYIRAVGF 101: LYLRYVADAK TLWTWYEPYI KDDEEFSPGS NGRMTTMGVY VRDLLLGLYY FDTLFPRIPV PVMRQIVSNL EKMNLPTKPS GSTGDMTRGS EDTARRPPSV 201: KASLSVSFGQ RAPHRASTRG SSPVRRPPPT GYDRNGGDEV QQRSPRRSQS RDYYSDRDSD RQREREREKD RERERGRDRY RERERDYGND RRSRRDYDSR 301: SRRNDYEDDR SRHDRRSRSR SRSRSRSVQI EREPTPKRDS SNKEKSAVTV NSNLAKLKDL YGDASSQKRD EGFGTRKDSS SEEVIKLGGS SWR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)