AT5G37190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : COP1-interacting protein 4 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
COP1-interacting protein 4, a nuclear-localized positive regulator of arabidopsis photomorphogenesis | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
COP1-interacting protein 4 (CIP4); FUNCTIONS IN: transcription cofactor activity; INVOLVED IN: regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 4.1 (TAIR:AT4G00930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:14723362..14726694 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95386.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.95 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||
| Length | 876 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANRETNSSP EIRCVFVETN LDTRLILHVH KDEIISDFKD RLLKEHKQVF PEIGEIQISA LKVKRRRKFY HFSDSLHVCK AFDGISRNWF MYIDAIRVDK 101: GKMYAIMAAD QNLELVEKKE EIANGLVLVD DMNNKDLTSG EGLETEVVEE KTRKRRIISP GGNTSPKKSK VDLSPSAVAA TTELCGKVKG EVVSQSCAVS 201: PREKLDDVVT RADIESGEKS GLSMGEKQQT SVTERLLEEK NLTVNSELVD GHTGGVVKEV PDNQTIKEAL EKVDDLTGTI EQDLEKGGKT ADIVMIDQEK 301: DLPPASKLVD GQITSQVDER GEGRRLAPSA VDNLQTAEVV TNVDNQLEAS SSLTTGPATE KKRKRMKSSK DHIKQNGNEM ADILVDKVGS GEATLIGADE 401: IQAASNLQVA GMASTPHAFV QESKTLDHIG KVTDTEHKVP QERVEIDADQ AKSVKSTKKK SSRKAKTPAK EDTLVDFGAQ NVEPIKVVDG EGHVNDIRNV 501: LDSLQQRTEV EENMEKSGKK SSKRSKKKDS LNIVEEAQVV DSLQQKKEAE ENLEKSGKKS SKKTKKKDSL NIVEEAQVLS VEVNNVAQEE ASPINNPKDT 601: DASFTPAKKT TESNASPLKK ISEVTDNTED LNRSMQVLKE NADMGDNFGS SQKDDIVGGT NKEDQVTGGA KSKKEKKSLD LHPGGSIDGS MKVKETKGRV 701: QPSSSGTSQL QSRAKNDRNG SKVDLSDASM KGTVNNKKEA VKKSSNSVTV NNSKVNVNNK KEVVKKISNS VTANKITTNF FKDAEEDESK TTSSDSSNAP 801: SDSSSDNDSD VTSSMYMKQG NNLVGGTNRL SGSLQDILRS SKSYKAAKLT ASLSQSVAFD DESLGINVVP DSQAAI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)