AT5G37160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.784 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.12 twelve leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G37150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:14705426..14708376 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97755.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||
| Length | 871 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDTKEIRKLL EKNEQTSLFA RLCSWSLKDI LNEDLSKEKI MTIPDRFSSV DEYSQCFVPH LLEETRTELF SSFRSLSKSP VSRILSVETK VIEYSGRSSI 101: KWFHDIKLMD YADDKNEIYE PKCGDIIALS PLSLTEERPR IDDLDPLLLG YVFSVYGDSK ISVHFSRSIS QSEKHTFCTG VFLINITTNT RIWNALHKDA 201: ADSTLIQSVL QEDASATEQC FSCENDVDGS DSDRVVDIIR SAKLNSSQEA AILGFLKTRN CKHKESVKLI WGPPGTGKTK TVATLLSTLM QLKCKTVVCA 301: PTNTTIVAVA SRLLSLSKET IVCAPTNSAI AEVVSRFEFS TLFYGTSILE RTTYGMGNIV LSGNRERMGI TSNKVLLNVF FNDRVSKLGR LFLSTCGWKK 401: RLESIIDFLE NTETKYEQHV NELELERMTE DEKKKEEVEE RTMQEVDMAD LSTHLPKSFI SSKDVKNLIA ACQALHRVRY FLQENSSRDD FKKGGFRFNC 501: FNKLISVDAL QALCLLPKCF GIFGLANNED IRKFCLQNAD IIFCTASSVA NINPARIGSV DLLVVDETAQ LKECESVAAL QLPGLCHALL IGDEYQLPAM 601: VHNEECDKAK FGRSLFERLV LIGHSKHLLN VQYRMHPSIS RFPNKEFYGG RITDAANVQE SIYEKRFLQG NMFGTFSFIN VGRGKEEFGD GHSPKNMVEV 701: AVISKIISNL FKVSSQRKQK MSVGVISPYK GQVRAIQERV GDKYNSLSVD QLFTLNVQSV DGFQGGEVDV IIISTVRCNV NGNVGFLSNR QRANVALTRA 801: RHCLWVIGNG TTLALSGSIW AELISESRTR GCFYDAVDDK NLRDAMSDAL LDDVSSSFGS LSIRNGRRND W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)