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AT5G37140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G52090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1112eggNOG:KOG1801EMBL:CP002688EnsemblPlants:AT5G37140
EnsemblPlants:AT5G37140.1entrez:833686Gene3D:3.40.50.300GeneID:833686
GO:GO:0016787Gramene:AT5G37140.1hmmpanther:PTHR10887hmmpanther:PTHR10887:SF338
InParanoid:F4K5W4InterPro:IPR027417iPTMnet:F4K5W4KEGG:ath:AT5G37140
KO:K10706ncoils:CoilOMA:RMGIKENPaxDb:F4K5W4
Pfam:PF13086Pfam:PF13087PRIDE:F4K5W4ProteinModelPortal:F4K5W4
Proteomes:UP000006548RefSeq:NP_198530.1SMR:F4K5W4STRING:3702.AT5G37140.1
SUPFAM:SSF52540TAIR:AT5G37140UniGene:At.55175UniProt:F4K5W4
Coordinates (TAIR10) chr5:+:14690436..14692851
Molecular Weight (calculated) 77296.80 Da
IEP (calculated) 8.71
GRAVY (calculated) -0.23
Length 692 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHQFKETSL QFGVFLMNLT TNTRIWNALH NEAANSTLIK SVLQENTLTT EQCVCESGAH GSDRVTNIIR SAKLNSSQEA AILSCLKIRN CNHKHSVKLI
101: WGPPGTGKTK TVATLLFCLL KLSCKTVVCA PTNTAIVEVT SRLLSLFKTS SSEHSTYGLG NIVLSGNQAR MGIKENDVLL DVFLDERIGI LTSLFSPTSG
201: WKQRLESLID FLENTEAKYE HYVHLLKEVE RMSEEAEKKK KGADKKPKAI KILTFGEFVK KTFDGFSEEL EKGMVDLWTH LPKSFITSEN VKSMVTARKA
301: LQRVRYFLKE NFSRDDFKKG SLKFDCFNGV SAYCLQILRL LPERFEVSDM LENNDTKTFC LQNADIIFCT ASGAADMNPI RTGSVDLLVV DEAAQLKECE
401: SVAALQLSGL RHAVLIGDEL QLPAMVHNEA KFGRSLFERL VLLGHNKHLL NVQYRMHPSI SRFPNKEFYG GRIKDAANVQ ESIYQKRFLQ GNMFGSFSFI
501: NVGRGEEEFG DGHSPKNMVE VAVISEIISN LFKVSSERRI KMSVGVVSPY KGQVRAIQER TTNKYSSLSG LFTLNVRSVD GFQGGEEDII IISTVRSNGN
601: GKVGFLNNRQ RANVALTRAR HCLWVIGNET TLALSGSSWA KLISESRTLG CFYDAADEKN LRDAMNEALL EDVSTSFGSL SIRNGYGKRN AW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)