AT5G37130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.884 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein prenylyltransferase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G17270.1); Has 5505 Blast hits to 3950 proteins in 698 species: Archae - 506; Bacteria - 2164; Metazoa - 520; Fungi - 303; Plants - 259; Viruses - 0; Other Eukaryotes - 1753 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:14681455..14686529 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99263.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.98 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||
| Length | 877 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGGEVKILR GYELRLIRCT VSLPLSDPPL DESQPGTHPH DSLIKSLLSS IEAGNYLEAL ASEATNLILG EYEFDPVDSA ERVYSELLNK VESFVLNDSS 101: DEIDKARRSF LVMCLAIAAA FWFTCCNLTG STQGSTKCSL PFRVPESKEL VEWENWAKIH LMSAGSDLLG KFSNLQHLVF ARLLLLKLKD LLFETSASET 201: FQLRSISWWL VRVLLIHQRV LHEPSSSLFE MLQVYMAEAL DHFGALEKVE SYWGAKLLQD EASSITSIIH LEACVLQYIY RRIDPFRLQL ESAKAAAGLE 301: FSVTGALGFR TIHQVVPKAQ MVLVANTSSS NGAVRLASEK ADVGPYGAWE GETPQVFMTP KLVNNESEAG TDSVPLKPVE QALILAQCLL IERGSRHDAM 401: QSWDMAPYIE AIDSQKSTYF VLRCFCDLLR VRWESSRYRT RERARDMMDK LVGAISKSDP GVSNRIPLCY AVYLPTIPAL RKEYGELLVS CGYVGEAITI 501: FESLELWDNL IYCYCSMGKK SAAVDLINAR LLERPNDPRL WCSLGDVTIS DSCYEKALEV SNDKSVRAKR ALARSAYNRG DFEKSKILWE AAMALNSLYS 601: DGWFALGAAA LKARDLQKAL DAFTLAVHLD PDNWLAWNNI ASLHMIKKKS KESFIAFKEV LKLNRDSWQI WENFSHVAMD VGNTDQAFEA IQQIMRLTQN 701: KSISVVLLDR LMTDLENRNI SYESSSNELI KTKPTTTERL YIELFGKIIQ QIVKTESTFE NWGLYARWSR INGDLTICSE ALLKQVRSYL GVEMWKDKER 801: FKKFARASLE LCRVYIEISA SVESKRELFS AEMHLKNTIK QARKSFGETE ELKELESCLE EVRNVTQKFE GTTNIKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)