AT5G36930.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.697 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:14567771..14571916 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 136039.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1191 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLGMAQGRER IPERWTYDVF VSFRGADVRK NFLSHLYDSL RRCGISTFMD DVELQRGEYI SPELLNAIET SKILIVVLTK DYASSAWCLD ELVHIMKSHK 0101: NNPSHMVFPI FLYVDPSDIR WQQGSYAKSF SKHKNSHPLN KLKDWREALT KVANISGWDI KNRNEAECIA DITREILKRL PCQYLHVPSY AVGLRSRLQH 0201: ISSLLSIGSD GVRVIVIYGM GGIGKTTLAK VAFNEFSHLF EGSSFLENFR EYSKKPEGRT HLQHQLLSDI LRRNDIEFKG LDHAVKERFR SKRVLLVVDD 0301: VDDVHQLNSA AIDRDCFGHG SRIIITTRNM HLLKQLRAEG SYSPKELDGD ESLELFSWHA FRTSEPPKEF LQHSEEVVTY CAGLPLAVEV LGAFLIERSI 0401: REWESTLKLL KRIPNDNIQA KLQISFNALT IEQKDVFLDI ACFFIGVDSY YVACILDGCN LYPDIVLSLL MERCLITISG NNIMMHDLLR DMGRQIVREI 0501: SPKKCGERSR LWSHNDVVGV LKKKSGTNAI EGLSLKADVM DFQYFEVEAF AKMQELRLLE LRYVDLNGSY EHFPKDLRWL CWHGFSLECF PINLSLESLA 0601: ALDLQYSNLK RFWKAQSPPQ PANMVKYLDL SHSVYLRETP DFSYFPNVEK LILINCKSLV LVHKSIGILD KKLVLLNLSS CIELDVLPEE IYKLKSLESL 0701: FLSNCSKLER LDDALGELES LTTLLADFTA LREIPSTINQ LKKLKRLSLN GCKGLLSDDI DNLYSEKSHS VSLLRPVSLS GLTYMRILSL GYCNLSDELI 0801: PEDIGSLSFL RDLDLRGNSF CNLPTDFATL PNLGELLLSD CSKLQSILSL PRSLLFLDVG KCIMLKRTPD ISKCSALFKL QLNDCISLFE IPGIHNHEYL 0901: SFIVLDGCKL ASTDTTINTM LENWLKRNHE CIYIPVDRPN VIPNWVYFEE EKRSFSITVP ETDNSDTVVG FTLWMNFVCP MGYSSIYPRA IIVRNLTRGS 1001: AWIHSLKNSK IRIQMNANLL TNDFHIVTGD EIEVDVDCDD RFTILATGIA LCYKARDSSD FSFGDIKFTY EEDDLGYASN GIYLDCHRSK YGHDSLQAVV 1101: HWKISYPMDG ETSNLFACSF FPGISRYQEN NQPVVDVEES NHRPRRKMRM SLWKILGAIG FLTLVVVLEV YFELLSSIFA NSTTDYIMLP T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)