AT5G36870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.948 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glucan synthase-like 9 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a gene similar to callose synthase | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glucan synthase-like 9 (GSL09); FUNCTIONS IN: 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, membrane; EXPRESSED IN: shoot apex, petal, root, flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: glucan synthase-like 3 (TAIR:AT2G31960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:14518316..14533930 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 216150.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.40 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1871 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNQPNRGQIL QTVFSHFFPV ASPDSELVPS SLHEDITPIL RVAKDVEDTN PRSLFLQDLD IKSVDDSINI LSGHSHALDK ANELDPTSSG RDVRQFKNTI 0101: LQWLEKNNES TLKARQKSSD AHEMQSFYQQ YGDEGINDLL NAGAGSSSSQ RTKIYQTAVV LYDVLDAVHR KANIKVAAKI LESHAEVEAK NKIYVPYNIL 0201: PLDPDSKNHA MMRDPKIVAV LKAIRYTSDL TWQIGHKIND DEDVLDWLKT MFRFQKDNVS NQREHLILLL ANVQMRQTQR QPNLLDDRAL DTVMEKLLGN 0301: YNKWCNHVGL ESSLRFPKDK QQKVVQQRKL LYTGLYLLIW GEAANLRFMP ECLCYIYHHM AFELFEMLES KGSKKKYKPK NPTYSGKDED FLTKVVTPVY 0401: KTIAEEAKKS GEGKHSEWRN YDDLNEYFWS KQYLDKLGWP MKANADFFCK TSQQLGLNKS EKKPDLGDGC VGKVNFVEIR TFWHLFRSFD RMWSFYILSL 0501: QAMIIIAWNE TSESGGAVFH KVLSVFITAA KLNLFQAFLD IALSWKARHS MSTHVRQRYI FKAVAAAVWV LLMPLTYAYS HTSIFIVAIL IYLSPNMLPE 0601: MLLLIPSIRR TLEKSDFRPV KLIMWWSQPE LYIGRGMHES AWSIYKYMMF WIVLLTSKLA FSYYVEQIKP LMGPTKEIMS VPMPGYWLPE FFPHVKNNRG 0701: VVITLWSPVI LVYFMDTQIW YAIVSTLVGG LYGAFRHIGE IQTLGMLRSR FQSLPGAFNA CLIPNENTKE KGIKLAFSRK CHKIPNTNGK EAKQFSQMWN 0801: TIINSFREED LISNRELELL LMSCWAYPDL DFIRWPIFLL ASKIPIAVDI AKKRNGKHRE LKNILAEDNC MSCAVRECYA SIKKLLNTLV TGNSDLMLIT 0901: TVFTIIDTHI EKDTLLTELN LSVLPDLHGH FVKLTEYVLQ NKDKDKIQIV NVLLKILEMV TKDILKEEIK RLHLLLTVKE SAMDVPSNLE ARRRLTFFSN 1001: SLFMEMPGAP KIQNMLSFSA LTPYYSEDVL FSTFDLEKEN DGVSILFYLQ KIFPDEWKNF LERVKCGTEE ELDAIDYLKE EIRLWASYRG QTLTKTVRGM 1101: MYYQKALELQ AFFDLANERE LMKGYKSAEA SSSGSSLWAE CQALADIKFT YVVACQQYSI HKRSGDQRAK DILTLMTTYP SLRVAYIDEV EQTHIYSKGT 1201: SENFYYSALV KAAPQTYSTD SSDSGHMLDQ VIYQIKLPGP PIIGEGKPEN QNNAIIFTRG EALQTIDMNQ DYYIEEAFKM RNLLQEFLEK NGGVRYPTIL 1301: GLREHIFTRS VSCLAWFMSN QEHSFVTIGQ RVLANPLKVR FHYGHPDVFD RVFHLTRGGV SKASKVINLS EDIFAGFNST LREGTVSHHE YIQVGKGRDV 1401: GLNQISMFEA KIANGSGEQT LSRDLYRLGH QFDFFRMLSC YFTTVGFYFC SMLTVLTVYV FLYGRLYLVL SGVEKELGNK PMMMEIILAS QSFVQIVFLM 1501: AMPMIMEIGL ERGFYDALFD FVLMQLQLAS VFFTFQLGTK FHYYCKTLLH GGAEYRGTGR GFVVFHAKFA ENYRFYSRSH FVKATELGIL LLVYHIFGPT 1601: YIGLFTISIW FMVGTWLFAP FLFNPSGFEW HEIVEDWADW KKWIEYDNGG IGVPPEKSWE SWWEKDIEHL QHSGKWGIVV EIFFALRFFI FQYGLVYQLS 1701: AFKNKYSSLW VFGASWLLIL ILLLTVTVLD YARRRLGTEF QLLFRIIKVS LFLAFMAIFI TLMTCRLILP QDVFLCMLAL IPTGWGLLLI AQSCKPLIQQ 1801: PGIWSWVMTL AWVYDLVMGS LLFIPIAFMA WFPFISEFQT RMLFNQAFSR GLHISRILSG QRKHRSSKNK D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)