AT5G36300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.895 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT5G42310.1); Has 16266 Blast hits to 6548 proteins in 194 species: Archae - 4; Bacteria - 3; Metazoa - 128; Fungi - 56; Plants - 15579; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:14320668..14322398 | ||||||||||||
| Molecular Weight (calculated) | 32525.60 Da | ||||||||||||
| IEP (calculated) | 9.13 | ||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||
| Length | 284 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLLAEIHSL GSRPDPLSYV SFIETLASLR RTLEADALFH EVVRFMIYGS YSVRLYNALV SRYLRKEVSW RVVNEMKKRK FRLNSFVYGK IIRIYRDNGM 101: WKKALGIVEE IREIGLPMDV EIYNSVIDTF GKYGELDEEL QFGSFEDIGE LVGKLKSQGV APSANLFCTL ANAYAQQGLC KQTVKVLKMM ENEGIEPNLI 201: MLNVLINAFG TAGKHMEALS IYHHIKETVW IHPDVVTYST LMKAFTRAKK YEMVCSRNIQ GNGSFWVYNR SESKTIIAKC YYGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)