AT5G36170.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : high chlorophyll fluorescent 109 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Required for normal processing of polycistronic plastidial transcripts | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
high chlorophyll fluorescent 109 (HCF109); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, plastid organization, RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor 2 (InterPro:IPR004374), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 2 (TAIR:AT1G56350.1); Has 16243 Blast hits to 16243 proteins in 2786 species: Archae - 5; Bacteria - 10390; Metazoa - 230; Fungi - 206; Plants - 192; Viruses - 0; Other Eukaryotes - 5220 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:14236297..14237974 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43194.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.50 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||
| Length | 391 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMELTVLGP LAGRSFAIAG KPKLLLLRPT NLPLLRLSLP LSLPNFSSSS RFNSPIVFAA QESNLSVSNE NETSEWLMQD FYTLRKDVEI ASARVEEIRA 101: SANLQQLEQE ITNLESKATD TSFWDDRTKA QETLSSLNDL KDRMRLLSEF KTMVEDAETI VKLTEEMDST DVSLLEEAMG IIKELNKSLD KFELTQLLSG 201: PYDKEGAVVY ITAGAGGTDA QDWADMLLRM YMRWGEKQRY KTKVVEMSNG EEAGIKSATL EIEGRYAYGY ISGEKGTHRI VRQSPFNSKG LRQTSFSGVE 301: VMPLLPEEAV GIEIPEEDLD ISFTRAGGKG GQNVNKVETA VRITHIPTGV AVRCTDRVGC CRGEKSTGEQ DESSDQTKSE TDGDCGGATC Y |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)