AT5G35405.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF784) | ||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a ECA1 gametogenesis related family protein | ||||||||||||||||||||
| Computational Description (TAIR10) |
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF784) (TAIR:AT4G13261.1); Has 81 Blast hits to 81 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:13604277..13604726 | ||||||||||||||||||||
| Molecular Weight (calculated) | 16922.90 Da | ||||||||||||||||||||
| IEP (calculated) | 6.74 | ||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||
| Length | 149 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKSLLMVML VSIVMFYMAC PILSQEVHED VVISPTPFEK AISPAMEYEM KLPHYSQKQY DFLEACVEKP SSICGGEIFQ NVLDETNLVT DKCCRNILKI 101: GKDCHLGLMK ILFSSYEYKN IASIPRSKQT WNDCLRRVGS KIGVPVSFE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)