AT5G35400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.693 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pseudouridine synthase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G06950.1); Has 7309 Blast hits to 7255 proteins in 2416 species: Archae - 105; Bacteria - 5162; Metazoa - 124; Fungi - 79; Plants - 176; Viruses - 0; Other Eukaryotes - 1663 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:13599416..13602240 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47655.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||
| Length | 420 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASRVYVHYH HADACSKARW NARETFRFMY DRPWQHVLDF YSNAVEGNLS VLSLFQPKKS LVHDDGITEE MLLESEPETS TRKDGRSGRW ERVNFKIVLS 101: YNGASFDGWQ KQPDLHTVQG VVEKSLGGFV DERKAQLLKK KCKPLEGRVL VAGRTDKGVS ALNQVCSFYT WRKDIEPIAI EDAINKDASG KLRVVSISKV 201: SRSFHPNFSA KWRRYLYIFP LDDAEPLRKS GENHENFIFD ENKKKQRNGL LSEEIAEEVI MSEDDELEIE ETSNALEVVE KPSDFSVSKV DQLLQHLQGK 301: VLSYKMFARD TKAARNEGPP TECFMYHARA AEIRLSSSDC VEGRRVMCVE LVANRFLRKM VRVLVATSIR EAAAGAEDDA LLKLLEASCR RATAPPAPSE 401: GLCLFDVGYT DFDPQTSLIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)