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AT5G35100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, peptidyl-cysteine S-nitrosylation; LOCATED IN: thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT4G34960.1); Has 4654 Blast hits to 4654 proteins in 798 species: Archae - 9; Bacteria - 741; Metazoa - 1669; Fungi - 839; Plants - 784; Viruses - 0; Other Eukaryotes - 612 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G35100-MONOMERBioCyc:ARA:GQT-58-MONOMEREC:5.2.1.8eggNOG:COG0652
eggNOG:KOG0865EMBL:AF058825EMBL:AP000421EMBL:AY074520
EMBL:BT015407EMBL:CP002688EnsemblPlants:AT5G35100EnsemblPlants:AT5G35100.1
EnsemblPlants:AT5G35100.2entrez:833461ExpressionAtlas:O65220Gene3D:2.40.100.10
GeneID:833461Genevisible:O65220GO:GO:0003755GO:GO:0006457
GO:GO:0009507GO:GO:0031977GO:GO:0042277hmmpanther:PTHR11071
hmmpanther:PTHR11071:SF286HOGENOM:HOG000015122InParanoid:O65220InterPro:IPR002130
InterPro:IPR024936InterPro:IPR029000KEGG:ath:AT5G35100KO:K03768
OMA:NARSLWNPANTHER:PTHR11071PaxDb:O65220Pfam:O65220
Pfam:PF00160Pfscan:PS50072PIR:T01157PRIDE:O65220
PRINTS:PR00153PRO:PR:O65220PROSITE:PS50072ProteinModelPortal:O65220
Proteomes:UP000006548RefSeq:NP_001078636.1RefSeq:NP_198360.2SMR:O65220
STRING:3702.AT5G35100.1SUPFAM:SSF50891TAIR:AT5G35100UniGene:At.27662
UniGene:At.67813UniProt:O65220
Coordinates (TAIR10) chr5:-:13360459..13361377
Molecular Weight (calculated) 30506.30 Da
IEP (calculated) 7.34
GRAVY (calculated) -0.19
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSILIPP ILTRRNLLLS TTIATVTPPP PAKPPSPDIT ITDRVFLDFS LCPTYFRSDP SATLSSTTPC SDSTPLGRVV LGLYGRHVPI TVSTFKRMCT
101: SSSTSYKNTP VHKIFPGQYF LAGRQGGGRR DTAEVGYSLR DLPRNTDVVN SKAFLLPHAR AGVVSLCLSE NDDDDDIRLD PDYRNVEFLI TTGPGPSPQL
201: DGGNIVFGTV LEGLDVVTSI SSIPTYKPSE NIKQFNDFAE FLGDERAQNA RSLWNRPLKT VFISGCGELK VTNPSLSPTL P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)