AT5G30500.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.996 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galactinol synthase 6 (TAIR:AT4G26250.1); Has 1045 Blast hits to 1044 proteins in 249 species: Archae - 0; Bacteria - 64; Metazoa - 246; Fungi - 211; Plants - 411; Viruses - 65; Other Eukaryotes - 48 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:11615345..11616926 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 37365.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.88 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 328 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAPTEMNIER KVEADVAVIP NDGKRAYVTF LAGNQDYWMG VVGLAKGLRK VKAAYPLVVA MLPDVPKEHR QILVAQGCII REIEPVYPPE NQAGYAMAYY 101: VINYSKLRIW EFVEYEKMIY LDGDIQVFSN IDHLFDTPSG YLYAVKDCFC EGSWSKTPQY KIGYCQQSPE KVRWPMNSLG HVPPLYFNAG MLVFEPNLLT 201: YEDLLQTVQV TTPTSFAEQP IPSTYNLVLA MLWRHPECID LDQINVVHYC AKGSKPWRFT GEEEHMDRED IKMLVKKWWD IYEDTSLDYK TFVENESKLN 301: PIVAALASKE SGCDGLTSLA PSAAKSNP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)