AT5G29624.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.842 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, C2H2-like (InterPro:IPR015880), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G54050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:11285138..11286604 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56659.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.79 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||
| Length | 488 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSTDDFVAD TTPELMFPFY HHPLSAYDYS SSYILQEKAY CCFMCVYSLF DKEPMLLPDI DYHCTECGLN MHKKCIKRLF LNWPFLCNHV LNIFQNTFTS 101: SDNIDDFSCH FCQSRIKSSF ARFTLCNINV DEKCMVELQP PLKISEPKHH KYSLTILLWL VTFICSPCGV EGDHNPYVCL ECSLMVHRDC IEDLPRVISI 201: NRHDHRISHT FHLGEREGGW ECGVCQTMIN WVYGAYKCSR CPSYVVHSGC ATKKEVWDGL DLEDVPDEEE EIKDPFKVIN ENGDIVHISH EEHVLRLDEN 301: YVTDDANMRC QCCILAINGD PCYRCVECDF ILHDACANLP RKKQHLLHKH KLTLSSTCID GETYCQCKVY DVYTDGFIYK CHHEDCESKY INYDARCSSV 401: LEPFHHDLHQ HPLYFTLQSS RRCQACDREI HDDPLNCTVC DDYSLFMRCA TLPRKVKHRC DDHFLSLCQG VGNAIGDLWC DICETKTN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)