AT5G28960.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.992 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:10996591..10998783 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 61255.40 Da | ||||||||||||||||||||||||
IEP (calculated) | 8.83 | ||||||||||||||||||||||||
GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||
Length | 536 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSMKSLNRMV SEKALKLGNS FPCQICVVGI LCGICFTSLF LAALTSLGTF ELAAFSLSAS SSAFLPYNST SHIIHMVSSM DRKLKWTNKA EKGDNDDQVK 101: LLVSAWDNLV LNNEDFLKKL GMNKSDVPNA PHLENCEVIS RVRERLDTRI ANQSFPTWIT GGDEQNYPLT RIVQSEIWIH QHPLDCENET VKFLVVDWET 201: LPIYGSGAQI TEMTGLLAIA INENRVLVAN HYNRADHDGC RGSSRGRWSC YFLPETSEEC RKRAFAVVRE KEAWESGTVT GKQNYSSKVI WAGPIPKLWG 301: KPWSYMKPTT EINGSLISKH RKMDRRWWRA QAVRYLMRFQ TAYTCGLMNA ARNTAFGKEA AEIVLSAGDW RKNKKKKVKT EIEEQVWSNH KPWVPRPMLS 401: VHVRMGDKAC EMRVAALEEY MHLADRIKDR FPELNKIWLS TEMKEVVDKS KDYDHWRFYY TEVARQVGNK SIAEYEASLG RETSTNYPLV NFLMASEADF 501: FVGALGSTWC FLIDGMRNTG GKVMSGYLSV NKDRFW |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)