AT5G28910.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.401 plasma membrane 0.390 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 82 Blast hits to 80 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:10930633..10932575 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 61482.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.76 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||
| Length | 535 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMKSLERVV SERALKLGNS FPCQICVVGF LCGICLTSLF LAALTSLGTF EFAAFSFTSS SSVFPPCNSS TSHIINMVAS IDRKLKWKNK VEIEEEDEVK 101: LLVSAWDNLL LNEEDFLKKV GINKSDVPNG PHLENCEEKA RVRERLDTRL ANWTLPPWIS GGDEENYPLT RRVQRDIWIH QHPLDCGNKS LKFLVADWET 201: LPGFGIGAQI AGMTGLLAIA INENRVLVAN YYNRADHDGC KGSFRGNWSC YFLQETSEEC RKRAFAIVKK REAWESGIVT GKQNYSTKEI WAGAIPKQWG 301: KPWSYMKPTT EINGSLISNH RKMDRRWWRA QAVRYLMRYQ TEYTCGLMNI ARNSAFGKEA AKIVLSAGDW RKKNKKMRTE IEEQVWSDHK PWLPRPMLSV 401: HVRMGDKACE MRVAALEEYM HLADRIRDRF PELNRIWLST EMKEVVDRSK DYAHWRFYYT EVARQVGNKS MAEYEASLGR EMSTNYPLVN FLMASEADFF 501: VGALGSTWCF LIDGMRNTGG KVMSGYLSVN KDRFW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)