AT5G28810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.945 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF1985) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1985 (InterPro:IPR015410); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1); Has 439 Blast hits to 418 proteins in 91 species: Archae - 2; Bacteria - 72; Metazoa - 105; Fungi - 15; Plants - 124; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:10824433..10826575 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 62684.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.65 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||
| Length | 560 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSHTRSY PLRLYQEGIS PLQKRSMAHS CYVSQIGKIK DGLGADVWDE LKKTSLGLFI KPIRFSLYEF ENITGLNCDM FDESDTELER VFEISKTWSL 101: EKRMMVGRLC LLSVGVHGIH HGSRVPLSSA KRVLDPVAFE KYPWGRVAFD SLLRSVKIVK CDGDSYVIHG CVQALLVWIY ESVPGIGEAC GFGKTTLTCV 201: PLLDWRSSRK RFNFTAFIEK EKAAHRQVRV RHMIPVSEEN MYPKWSDSAE NQDMALDNLL KDIIHNRLQP HALTHVAARR KRKQNQGSSN EDGESKLMES 301: TPADDVIAEV SHKKQRTGKA HVNEEEKTSL LDIWNMLEKM NVTVSDIDKN ASSRLDGLQK KVTCLEASVK TRFEAVETDM RVLKECQPPV VSNEAATSNN 401: NDEYEANSNQ PSWVVEEKPG SVDGLPIQRV VKKAVNSVKN KEAGTKVLTK KKVAKSDKKK IIVNVEKVGK PKPEMKKTVV KVEKVDSSKP EKKKSGAAPT 501: TKTFDDDVVD VTDKVNADNL KMASSFEETF SNPLDQMANK ATADALRALQ EGLDNLDCVP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)