AT5G28780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PIF1 helicase | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PIF1 helicase; CONTAINS InterPro DOMAIN/s: DNA helicase PIF1, ATP-dependent (InterPro:IPR010285); BEST Arabidopsis thaliana protein match is: PIF1 helicase (TAIR:AT3G51690.1); Has 1364 Blast hits to 1355 proteins in 303 species: Archae - 2; Bacteria - 367; Metazoa - 234; Fungi - 111; Plants - 389; Viruses - 9; Other Eukaryotes - 252 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:10812907..10814173 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37871.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 337 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRVRDKNGDV GTFVVLDGEG TKIAGRSVRD VLNEYMEAVG KDSYEGINTK WNTSRHCTCC YNVGNGNAPT CETDDGEVVE MDTSFFLKHN GNRLQQVTKG 101: AYVQFSVSQP NFQYLTERGI LTPHNEYVDE INAYMLSQVG GDSKEYLSSY SIGKADTIGA DYEALYHVKY LNSLEFPSLP KHKISLKKGV PIMQMRNFNQ 201: KEGLCNGTRL IVTNLGEQVI EAQIVTGTHA GKMVSIPRFI LSPPQSEHPF TLRRQQFPMR VCYAMTIIKN QGQSLKSDVL YLPNPVFSHV QLYVALSRVT 301: SPIGLTILHG DDQKNDEVKN IVYKEFYNDL PKETDPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)