AT5G28470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, pollen tube growth; LOCATED IN: membrane; EXPRESSED IN: petal, leaf whorl, sepal, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.7 (TAIR:AT1G69870.1); Has 3642 Blast hits to 3525 proteins in 525 species: Archae - 0; Bacteria - 558; Metazoa - 480; Fungi - 335; Plants - 2158; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:10429813..10432357 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61604.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.82 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.38 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 559 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVESSSPSS HALIKKEKGG WRAIKYIIAN ESFEKLASMS LIGNLSVYLM TKYNLGGVFL VNVINIWFGS CNILTLAGAF VSDAYLGRFW TLLLGSIASF 101: IGMGIFALTA ALPSLRPDAC IDPSNCSNQP AKWQLGVLFS GLGLLAIGAG GVRPCNIAFG ADQFDTSTKK GKAHLETFFN WWYFSFTVAL VIALTGVVYI 201: QTNISWVIGF VIPTACLALS ITTFVIGQHT YICAKAEGSV FADIVKVVTA ACKKRKVKPG SDITFYIGPS NDGSPTTLVR DKHRLRFFDK ASIVTNPNEL 301: NEDGNAKYKW RLCSVQQVKN LKCVTAILPV WVTGIACFIL TDQQNIYGIL QAMQMDKTFG PHNFQVPAGW MNLVSMITLA IWISLYECVI IPIVKQITGR 401: KKRLTLKHRI EIVMGIICMI VAGFQEKKRR ASALKNGSFV SPVSIVMLLP QFALAGLTEA FSAVALMEFL TVRMPEHMRA VAGAIFFLSS SIASYICTLL 501: INVIDAVTRK EGKSWLGDKD LNKNRLENYF FIIAGIQVAN LLYFRLFASR YATENKKGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)