AT5G28460.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:10374927..10377227 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 86970.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.73 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 766 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSIMLSISRR QNSYILLNHS RFLRRFSYDV DPRPEIKSES QEFVVVKFVK TLQNTPQHDW ASSESLSALV VSSSSASPLV FSQITRRLGS YSLAISFFEY 101: LDAKSQSLKR REESLSLALQ SVIEFAGSEP DPRDKLLRLY EIAKEKNIPL TIVATKLLIR WFGRMGMVNQ SVLVYERLDS NMKNSQVRNV VVDVLLRNGL 201: VDDAFKVLDE MLQKESVFPP NRITADIVLH EVWKERLLTE EKIIALISRF SSHGVSPNSV WLTRFISSLC KNARANTAWD ILSDLMKNKT PLEAPPFNAL 301: LSCLGRNMDI SRMNDLVLKM DEVKIRPDVV TLGILINTLC KSRRVDEALE VFEQMRGKRT DDGNVIKADS IHFNTLIDGL CKVGRLKEAE ELLVRMKLEE 401: RCVPNAVTYN CLIDGYCRAG KLETAKEVVS RMKEDEIKPN VVTVNTIVGG MCRHHGLNMA VVFFMDMEKE GVKGNVVTYM TLIHACCSVS NVEKAMYWYE 501: KMLEAGCSPD AKIYYALISG LCQVRRDHDA IRVVEKLKEG GFSLDLLAYN MLIGLFCDKN NAEKVYEMLT DMEKEGKKPD SITYNTLISF FGKHKDFESV 601: ERMMEQMRED GLDPTVTTYG AVIDAYCSVG ELDEALKLFK DMGLHSKVNP NTVIYNILIN AFSKLGNFGQ ALSLKEEMKM KMVRPNVETY NALFKCLNEK 701: TQGETLLKLM DEMVEQSCEP NQITMEILME RLSGSDELVK LRKFMQGYSV ASPTEKASPF DVFSLG |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)