AT5G28450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Chlorophyll A-B binding family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Chlorophyll A-B binding family protein; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 1998 Blast hits to 1946 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1792; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:10372978..10374190 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 18949.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.27 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||
| Length | 173 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MACLQLIANV FFSSSARLSR RSQDKPFSNL YPRSLVRSSE LALQLVSKII WLRVPLAGVR SRARSNGRKG RAPDIIKPGS VNTDPVFPNN KLTGTDIGYP 101: GGLWFDPLGW GSGSPTKIKE LRTKEIKNGR LAMLAVMGAW FQHIYTGTGP IDNLFAHLAD PGHATIFAAF TPK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)