AT5G28370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:10332375..10334558 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82857.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.43 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 727 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSIMLSISRR QNSYILLNHS RFLRRFSYDV DPRPEIKSES QEFVVVKFVK TLQNTPQHDW ASSESLSALV VSSSSASPLV FSQITRRLGS YSLAISFFEY 101: LDAKSQSLKR REESLSLALQ SVIEFAGSEP DPRDKLLRLY EIAKEKNIPL TIVATKLLIR WFGRMGMVNQ SVLVYERLDS NMKNSQVRNV VVDVLLRNGL 201: VDDAFKVLDE MLQKESVFPP NRITADIVLH EVWKERLLTE EKIIALISRF SSHGVSPNSV WLTRFISSLC KNARANTAWD ILSDLMKNKT PLEAPPFNAL 301: LSCLGRNMDI SRMNDLVLKM DEVKIRPDVV TLGILINTLC KSRRVDEALE VFEQMRGKRT DDGNVIKADS IHFNTLIDGL CKVGRLKEAE ELLVRMKLEE 401: RCVPNAVTYN CLIDGYCRAG KLETAKEVVS RMKEDEIKPN VVTVNTIVGG MCRHHGLNMA VVFFMDMEKE GVKGNVVTYM TLIHACCSVS NVEKAMYWYE 501: KMLEAGCSPD AKIYYALISG LCQVRRDHDA IRVVEKLKEG GFSLDLLAYN MLIGLFCDKN NAEKVYEMLT DMEKEGKKPD SITYNTLISF FGKHKDFESV 601: ERMMEQMRED GLDPTVTTYG AVIDAYCSVG ELDEALKLFK DMGLHSKVNP NTVIYNILIN AFSKLGNFGQ ALSLKEEMKM KMVRPNVETY NALFKCLNEK 701: TQGETLLKLM DEMVEHLVNQ IRSQWRF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)