AT5G28210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.881 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mRNA capping enzyme family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
mRNA capping enzyme family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, mRNA processing, dephosphorylation, mRNA capping; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), mRNA capping enzyme (InterPro:IPR001339), mRNA capping enzyme, bifunctional (InterPro:IPR017074), Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), mRNA capping enzyme, C-terminal (InterPro:IPR013846); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT5G01290.1); Has 858 Blast hits to 839 proteins in 248 species: Archae - 0; Bacteria - 4; Metazoa - 276; Fungi - 231; Plants - 76; Viruses - 73; Other Eukaryotes - 198 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:10188586..10190463 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73835.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.92 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 625 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MISTMYSEET SERSSFPSKR HLEDRTENRE EHSKRLRPTS FRDQKVTIPQ GWLDCPRFGQ HIGLIIPSKV PLSESYNDCV PSGKRYNFKQ WLTKIGLVID 101: LTNTTRYYHP NTELRQNRIE YVKIRCSGRD SVPDNVSVNT FVHEVTQFEN HNLSEKYLLV HCTHGHNRTG FMIVHYLMRS RPMMSVTQAL KIFSDARPPG 201: IYKPDYIDAL YRFYHEVKPG SVICPPTPEW KRSEEAKFDD DDNALSYREV QGNNQEENVQ LSNDDVLGDE IPYDQEVSYQ NSINHMLNIS MQFPGSHPLS 301: LGREALQLLR QRYYYATWKA DGTRYMMLLT RDGCYLVNRE YRFRRVQMRF PCEYEPSDYK VHHYTLLDGE MVVDTIKEGE TQRHVRRYLV YDLVAINGQF 401: VAERPFSERW NILERELIKP RNDEKKVRDH WYRYDKEPFG VRIKAFCLLS AVEKKVFNEL IPLLSHESDG LIFQGWDNPY VFGPNKDLLK WKFVETLDFL 501: FDMDKYGRQM LFLQERGRMK LMEGFAVEFR GDGWDNDLAS YCGKIVECSW DKEKKVWVSL RIRVDKSKPN GIGTGRSVIK CIEDDLTKEV LLKEIKEIIL 601: LPMYVERIEN DTKEAARRKH GNRKG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)