AT5G28190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 45 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 7; Viruses - 2; Other Eukaryotes - 33 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:10167850..10170696 | ||||||||||||||||||||
| Molecular Weight (calculated) | 95497.90 Da | ||||||||||||||||||||
| IEP (calculated) | 5.29 | ||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||
| Length | 839 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYNCLRNSRL KGRLVDDYTE NCGGFQVKDF VNKPIYDVVG DDVSSTKRTY DGDPKIGVKD DGFNDVKNDG FDDVVSNAEN IDDYFNTQDV DDNDKAVANK 101: IDDVNVFVAV VEDCDSHDDP SQDEGASFDV TKVDDLVDNV NPLDVFSNVF SPVDDGCEED VYNTDFIGNQ VVEYRRLSSI QYEVVITNHD KELDLCNKIY 201: GTLISNSYKE ENPCYVDSYR EITEVECAKP FIFSRHCGLT RQDSHVSYKT NKTDEGVYVC SSQMEFMNWA FGREDPITIS LCCKSDVSDV YGEDVNVIYH 301: TDIFSSMGAL LTMVALCVEN ILMVRLLTHE INDVSSAVTN AMSFLLNVYG AIITATFERR GIFLLLFDVR HEPKSGRSNV FDTKRCHDLV QETSSSINHQ 401: CQEEMEWCSQ VAALIASLRS RMSQYWWDSS SQEDLLILSR QRPLGNYKIK SKVIGGFLMH VLRSSMGFSI RVMTCRRWKD SLLYCGNNNS GELYEEHTDG 501: EKYHLLVVVG SFGGVVMIGG LSKVHILHHH QVLVNMESSM VHVIFVLLHH VFWMVLVFPT TSISRESRAS FICWSEVACE SRKLLTCGKL SFVVACFSTN 601: VRFLVGKETT NALVLALMLK LHALSLDINS SSHTLPKITH GMFKKIWLCF LGDSKRWEEK CCWAEFANTF SYVSEHVNVF NTILIKIRGG IFSYRGKTTN 701: AMGFWNNQWN HLQPSCALIR KQYTSDVKTI SPANQEEEDL EGMMQRIKKT NAVNVVFMWK LLDFSLDMPP TIEWREKICE VMSLSKETAD ILVTCVQRIL 801: DSTIVLTKAL YGGTPSKRNA MKFLLESIMN WWTKDIFKI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)