suba logo
AT5G27889.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G27889EnsemblPlants:AT5G27889.1entrez:6240698
GeneID:6240698Gramene:AT5G27889.1KEGG:ath:AT5G27889PaxDb:B3H526
Proteomes:UP000006548RefSeq:NP_001119288.1TAIR:AT5G27889UniGene:At.73401
UniProt:B3H526
Coordinates (TAIR10) chr5:+:9903437..9903598
Molecular Weight (calculated) 6144.27 Da
IEP (calculated) 4.11
GRAVY (calculated) -0.18
Length 53 amino acids
Sequence (TAIR10)
(BLAST)
1: MDRSWFDLNG YGTNQDAYHV INDGLSIEDF EGRDLAGFLA KLMMGIWETL RLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)