AT5G27800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Class II aminoacyl-tRNA and biotin synthetases superfamily protein | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Class II aminoacyl-tRNA and biotin synthetases superfamily protein; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9842412..9843804 | ||||||||||||||||
| Molecular Weight (calculated) | 39082.00 Da | ||||||||||||||||
| IEP (calculated) | 5.64 | ||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||
| Length | 342 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLAQWLEKA SENDHGTRGD TRAPVSGFRG GNEELMCLTI VQGNQEVLSI GGLMKNNKLR FFGSISEHQV SVRIASGATN NFMSKDLAIY LKLPIKENNH 101: ILEDFLVLDV DKAEAEWITF SDKDRKLSTT KVKMRSENEL KEDCGTAAYY YLEDKIPRAT GKVQNKDVQM EDSWFPPIWT MADHYECEPE QSQQQETHKS 201: ILVDIQTNQI EAAFLVEKHY GETDEYLHLW VKMSDSQAGL EAGTPTRIPN KVPRYYTISE GNFSKLVSPI KEQMLRSQAE KKSEGYGGRQ DQKKLSHSTV 301: EFTFYHHEDK VILIGGSIDR IASWASWASW ASYGYWFKPV FP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)