AT5G27730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.974 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1624) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1624); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1624 (InterPro:IPR012429); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1624) (TAIR:AT5G47900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9820311..9822868 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53750.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.96 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.30 | ||||||||||||||||||||||||||||||||
| Length | 472 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEIKVERSH DQHLLEPKED TSSSYTRRSL AGNRPRLASL DIFRGLTVAL MILVDDAGGD WPMIAHAPWN GCNLADFVMP FFLFIVGVSI ALSLKRISNK 101: FEACKKVGFR TCKLLFWGLL LQGGFSHAPD ELTYGVDVTM MRFCGILQRI ALSYLVVALV EIFTKDSHEE NLSTGRFSIF KSYYWHWIVA ASVLVIYLAT 201: LYGTYVPDWE FVVYDKDSVL YGKILSVSCG VRGKLNPPCN AVGYVDRQVL GINHMYHHPA WRRSKACTDD SPYEGAIRQD APSWCRAPFE PEGILSSISA 301: ILSTIIGVHF GHIILHLKGH SARLKHWIST GLVLLALGLT LHFTHLMPLN KQLYSFSYIC VTSGAAALVF SSLYSLVDIL EWKHMFLPLK WIGMNAMLVY 401: VMGAEGILAA FFNGWYYRHP HNTLINWIRE HVFIRVWHSR RVGVLMYVIF AEILFWGLVT GVFHRFKIYW KL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)