AT5G27710.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.588 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:9813069..9815018 | ||||||||||||||||||||
| Molecular Weight (calculated) | 37520.80 Da | ||||||||||||||||||||
| IEP (calculated) | 6.99 | ||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||
| Length | 335 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVNSYVPLRF TIFISFSIAA ASSFKLHSAS HSPSSFPKAT GDDLLSVLGP PSAASCLNPI VSREIKSCLK FLVPFKSDKP KPEFGRCSPR TGLCSGKIDA 101: VERRSKFEEE NSLIWWPPES VLELARLAVD SGGDPGSIQR TLNPKMIPVP DVERSRKDKC QLTRTPYGRH FIAEEVNSYF EFLFHLIESR GPSVGLNVSL 201: SRYDLFHGHL FLASESGRLG ILFHAKEYPA YDKKVFPYNM GYCQRGSDVK YNDSMNLRNI LWLAPLPSNS SPDWVAPGVL VVLDAHPDGI IYRDLIPDYV 301: KFVRTIYEDD LGTTAVDVNY LNVGAHEPDY QLFMC |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)