AT5G27495.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Defensin-like (DEFL) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a defensin-like (DEFL) family protein. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Defensin-like (DEFL) family protein; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: pathogenesis; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Scorpion short chain toxin (InterPro:IPR001947); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 50 (TAIR:AT2G12465.1); Has 43 Blast hits to 43 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9706377..9706720 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 8770.96 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.66 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.28 | ||||||||||||||||||||||||||||||||
| Length | 80 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
1: MTISKKMLIV FVLTIFVVSF GHCSDSFPGL GLKKQAHKQC YSPDLCTGGD SKCDICCVLI SGVYYGKCIQ SKCHCLNKTK | ||||||||||||||||||||||||||||||||
| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)