AT5G26320.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:9238310..9241236 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40001.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.08 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||
| Length | 352 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDYQKWSLGF ISLVFLLITS SSAELLIKQV TEGRGIEYNN SYSLKTNLGL TRVLREERPS SKIVTITSFS VIKGRSEAFE SSTFEAAGYK WRFMLFVNGN 101: QNDPDGGHEN MALYVGIKET ESFPRGWEVN VDLKLFVHNE KLHKYLTVSD GTVKRYEAAK TYWGFGNLIP RTTLLDPNEG YILHDTLSFG AEISIVNPAE 201: KQEKITFISN PPDNVFTWKI LRFSTLENKF YYSDEFLVGD RYWRLGFNPK GYQGERPRAL SIFLYAQGYK ANAVITNTWG SVNLQLKNQR SSNHIQLYSE 301: AWCAIRSGYG IEGNSIILLE DLQNSSKGYL VNDAIIFEAE LVKVSVTNIV SA |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)