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AT5G25900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : plastid 11722763
SwissProt : plastid 16381842
TAIR : endoplasmic reticulum 16618929
TAIR : plastid 11722763
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GA requiring 3
Curator
Summary (TAIR10)
Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway.
Computational
Description (TAIR10)
GA requiring 3 (GA3); FUNCTIONS IN: oxygen binding; INVOLVED IN: gibberellin biosynthetic process, gibberellic acid mediated signaling pathway, ent-kaurene oxidation to kaurenoic acid; LOCATED IN: chloroplast outer membrane, endoplasmic reticulum, microsome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT5G07990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT5G25900-MONOMERBRENDA:1.14.13.78EC:1.14.13.78eggNOG:COG2124
eggNOG:KOG0156EMBL:AF047719EMBL:AF047720EMBL:AF047721
EMBL:AF149413EMBL:AY057671EMBL:CP002688EnsemblPlants:AT5G25900
EnsemblPlants:AT5G25900.1entrez:832659Gene3D:1.10.630.10GeneID:832659
Genevisible:Q93ZB2GO:GO:0005506GO:GO:0005783GO:GO:0009686
GO:GO:0009707GO:GO:0009740GO:GO:0010241GO:GO:0016021
GO:GO:0016709GO:GO:0020037GO:GO:0044550GO:GO:0052615
GO:GO:0052616GO:GO:0052617Gramene:AT5G25900.1gramene_pathway:1.14.13.78
gramene_pathway:PWY-5034gramene_plant_reactome:1119557gramene_plant_reactome:6874738gramene_plant_reactome:6875250
gramene_plant_reactome:6875931hmmpanther:PTHR24279hmmpanther:PTHR24279:SF57HOGENOM:HOG000241918
InParanoid:Q93ZB2InterPro:IPR001128InterPro:IPR002401InterPro:IPR017972
KEGG:ath:AT5G25900KO:K04122OMA:RAIFEHEPaxDb:Q93ZB2
Pfam:PF00067Pfam:Q93ZB2PhylomeDB:Q93ZB2PIR:T51806
PRIDE:Q93ZB2PRINTS:PR00463PRO:PR:Q93ZB2PROSITE:PS00086
ProteinModelPortal:Q93ZB2Proteomes:UP000006548RefSeq:NP_197962.1scanprosite:PS00086
SMR:Q93ZB2STRING:3702.AT5G25900.1SUPFAM:SSF48264SwissPalm:Q93ZB2
TAIR:AT5G25900tair10-symbols:ATKO1tair10-symbols:CYP701A3tair10-symbols:GA3
TMHMM:TMhelixUniGene:At.10791UniPathway:UPA00390UniProt:Q93ZB2
Coordinates (TAIR10) chr5:+:9036073..9038278
Molecular Weight (calculated) 58163.20 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.25
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFFSMISIL LGFVISSFIF IFFFKKLLSF SRKNMSEVST LPSVPVVPGF PVIGNLLQLK EKKPHKTFTR WSEIYGPIYS IKMGSSSLIV LNSTETAKEA
101: MVTRFSSIST RKLSNALTVL TCDKSMVATS DYDDFHKLVK RCLLNGLLGA NAQKRKRHYR DALIENVSSK LHAHARDHPQ EPVNFRAIFE HELFGVALKQ
201: AFGKDVESIY VKELGVTLSK DEIFKVLVHD MMEGAIDVDW RDFFPYLKWI PNKSFEARIQ QKHKRRLAVM NALIQDRLKQ NGSESDDDCY LNFLMSEAKT
301: LTKEQIAILV WETIIETADT TLVTTEWAIY ELAKHPSVQD RLCKEIQNVC GGEKFKEEQL SQVPYLNGVF HETLRKYSPA PLVPIRYAHE DTQIGGYHVP
401: AGSEIAINIY GCNMDKKRWE RPEDWWPERF LDDGKYETSD LHKTMAFGAG KRVCAGALQA SLMAGIAIGR LVQEFEWKLR DGEEENVDTY GLTSQKLYPL
501: MAIINPRRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)