AT5G25550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G24480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8894179..8895480 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48091.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.67 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 433 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRIYQPTLLI FTTVVLLSIS AVAPGGSRQL LYTRDDPITI PPYLIFENVR LERAYVALQA WKRAMISDPW NLTTNWFGSR VCDYNGVVCS ESLDDPLVKT 101: VSGVDLNQGD IAGHLPEELG LLTDIALFHV NSNRFCGTLP VGFSQLSLLF ELDLSNNRFA GKFPEVVIGL PKLKYLDLRY NEFEGELPES LFDKDLDALF 201: LNSNRFRSKI PVNMGNSPVS VLVLASNRFE GCIPPSFGKM GKTLNEIILM DNGLQSCIPN DMGLLQNVTV LDISYNWLVG ELPKSMGQME NLEVLNVERN 301: MLSGLIPDEL CSLEKLRDFR YGSNYFTGEP ATCRYLENYN YTMNCFKDVR DQRSMMECKM FLSKPVDCDS FKCSPGSSCF SPPPSQISPS SQPLAPAPSP 401: TSPPLSTPPP ARPCPPVYSP PPPPPLSLAP SMN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)