AT5G25430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.837 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HCO3- transporter family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT4G32510.1); Has 2636 Blast hits to 1421 proteins in 197 species: Archae - 0; Bacteria - 18; Metazoa - 1993; Fungi - 285; Plants - 221; Viruses - 2; Other Eukaryotes - 117 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8851251..8854259 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75556.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.30 | ||||||||||||||||||||||||||||||||||||||||
| Length | 671 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSEGESGPF QGILRDIEGR RKCYKQDWIR GIKTGIRILA PTCYIFFASS LPVVAFGEQL SKHTGGALSA VETLASTSIC GIIHAIFGGQ PLLIVGVAEP 101: TIIMYTYLYS FCISRPDIGR ELYLAWVAWV CVWTSVLLIL LSIFNAGTII TRFTRIAGEL FGMLIAVLFL QEAIKGLISE FHAPEIKNQE TGKSHFLLIY 201: ANGLLAVIFS LGLLITALKS RRAKSWKYGF GWLRSFIGDY GVPLMVLLWT ALSYTVPSEV LPSVPRRLFC PLPWEPASLY HWTVVKDMGK VPIMYILAAF 301: IPGVMIAGLY FFDHSVASQM AQQKEFNLKN PSAYHYDIFL LGIITLICGL LGLPPSNGVL PQAPMHTKSL AVLNRQLIRK KMVKKAKECM KMKASKSEIY 401: GRMQSVFIEM ETSPPQDNSV ATDLKELKEV VMRPDEGGDT KGKFDPDVHI EANLPVRVNE QRVSNLLQSV LVGLTLLAVT VIKMIPSSVL WGYFAYMAID 501: SLPGNQFWER LLLLFIPPSR LFKVLEGVHA SFVELVPYRV IVTFTLFQLV YFLLCYGMTW IPMAGIFFPA LFFLLISIRE HLLPKLFDMQ HLQVLDASDY 601: EEIVAAPIQH SSFAYRKLGS SHHLSEGEDE FYDAEILDEM TTSRGEIRIR TISFKEVHPE PEEKHVTFEP H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)