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AT5G25415.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of Unknown Function (DUF239)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G25410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G25415EnsemblPlants:AT5G25415.1entrez:832614
GeneID:832614Gramene:AT5G25415.1hmmpanther:PTHR31589hmmpanther:PTHR31589:SF17
InParanoid:F4JWS2InterPro:IPR004314KEGG:ath:AT5G25415OMA:MGNGNFP
PaxDb:F4JWS2Pfam:PF03080PhylomeDB:F4JWS2ProteinModelPortal:F4JWS2
Proteomes:UP000006548RefSeq:NP_568471.1TAIR:AT5G25415UniGene:At.54995
UniProt:F4JWS2
Coordinates (TAIR10) chr5:+:8834247..8837176
Molecular Weight (calculated) 37078.90 Da
IEP (calculated) 9.38
GRAVY (calculated) -0.41
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MHEPETSKPY LIFSSDNLEA MISSVLSNGD NNKNVLFTFR KTKGSLVRSD QTLPLRSFKL SENATYDCLD IFKQPGLNHP SLQNHTIQIA GVRSRAGPYH
101: GVEAWFNGYK LNVGRYQISY TQIFIGSRLN NQDNFIQAGY IINPGFFGTG QLWTYGFWKG KDGKGCYNTA CDGFIQVSRK IPIVQPIDLK PGVPDWSRWS
201: IHQDKGTGNW WLTQILQNAP NEDIGYWPKE LFNLINNGAT TVGVGGAVQA SGSGSSPPMG NGNFPVGGRA DSAIFTNIEV LDSNYNQRKM NSFPTEIMVD
301: SPKCYGLRIG KVKLFHRTRL GFFFNYGGPG GNSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)