AT5G25320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.514 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ACT-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ACT-like superfamily protein; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 3 (TAIR:AT1G76990.5); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8787403..8789530 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56315.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.47 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||
| Length | 500 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQKVCWPYFD PDFDNLGERI YGPPCRVYID NDSIQDCTVV KVNSENKQGL LLEVVQILTD MNLIITKSYI SSDGGWFMDV FHVKDEHGNK LTDKSVINHI 101: KHAIGTSRRE SDFIKASEAN NNSLEPQLAD HGEHTAIEMT GTDRPGLFSE IFAAFADLHC NVMEAHAWSH NARLACIAYV SDDNTHTPID DPSRLASIED 201: HLSTVIRATA DPASNSTHVG HKENETDGFL AGQGKGCMNS NMERRLHQLM LSVRDFDEPF CEPSSLSLLS SKLEYCDHKE RKTTIVSIGN CEERGYSIVT 301: VKSKDRRRLM FDTICTLVDM QYVIFHAALR SDGADAFQEY FIRHIDGRAL NTEGEKERVI KCLEAAIERR VCEGVKLELC AENRVGLLSD ITRVLRENGL 401: TVVRADVETQ GQKSLNAFYV RDISGNKIDM EFVESVKKEM RPIHLEVKNE DTKIDTVGSD EPTASASATP QRQPQPHRFS LGDILRSQME RLSLNFVPTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)