AT5G25300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast hits to 224 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8780258..8783093 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55265.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.88 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||
| Length | 477 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDTTNSSRWS ELPIDILRSL LEQKGGCAIY NPDEAKDYKT KRDSSGIRFL ANSVNWFLVL DSRSNLYIID VFSEKKIDLP PLESIKNGLY SLEQVGDEKK 101: KEYIVVWFFD KGTEYIAFCK NGEDHYRDIP IRKNVCKELQ DLYDMLLHGG NNLYISKTRQ SIRKLRFFEE EGFIDVDNSE ILPFRKISFY IDGARFSNNI 201: AVTTSREVLL VQNFFYETTR YRSFRLYKKD PNPDLNATIN NPYPMVELCS LGDVSASGFG DRKRSCLDMC MFNLVTKKLK RFPDLSNLKL TDARCTTTSS 301: GNNWKFSIIV SEVIDSKFLE LRFADLDSES QQQTKLKFSM LKSEFVDMNK EDSQIEINEK ETKINQEHDQ SDETQAKRRR SLTSSVWQDL VSVGGEANVK 401: EIDRSMETPN SSPPWSELPG DILRSVFERL SFVDFQRAKQ TCPIKRSKSN CLRLWLITFG GLERLPHLSS VCFISWT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)