AT5G25290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.509 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein with a domain of unknown function (DUF295) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8778592..8779785 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46336.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.69 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||
| Length | 397 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDTLIIVGSM VTLWSEIPMD ILRSVFERLS FVDLHRAKIV CSHWYSCSKQ SFLRKTRSPL VILFSDDGDC TLYNPEEARV YKSKRDLSRY RFLANSGNWF 101: LVLDPRSNLY IIDLFSEKKI NLPPLDSFKG YKYNLKKVGA RKFKELVSEY PTSFHHHAKD LRGLLWVDEK KEEYVVVWYF RNKYTMDSLA FCKNGEDHYR 201: EMPTHYGLHD ISDMVLQRGD HIYLSTSCKY LQKLDLSRQE GIRTKNDDII SRYQLPCRPT NYKLVYDAKC WCSYNIAVTS SGEVLFVLSI FSQSTRRRIF 301: FLYKEDPNPS PSEVIYKNLV EVDSLGDEAL LLDLGITVPA DSDLGIEPNS IYFTRHDRVA NQKRSSPDIC VFNIVTKTLK RFPGLSSLKD ARWFLPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)