AT5G25230.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Ribosomal protein S5/Elongation factor G/III/V family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G06220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:8739709..8743594 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108810.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.87 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 973 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDGSLYGECG NYIGPEIESD RDSDDSVEDE DLQEPGGSNG WITTINENQN IVLPEDKKYY PIAKEVYGED VETLVMDEDE QSLEQPIIKP VRDIRFEVGV 101: IKDQTTTYVS TLFLIGLMSN PALVRNVALV GHLQHGKTVF MDMLVEQTHR MSTFNAENDK HMRYTDTRVD EQERNISIKA VPMSLVLEDS RSKSYLCNIM 201: DTPGNVNFSD EMTASLRLAD GAVFIVDAAQ GVMVNTERAI RHAIQDHLPI VVVINKVDRL ITELKLPPRD AYYKLRYTIE VINNHISAAS TNAADLPLID 301: PAAGNVCFAS GTAGWSFTLQ SFARMYAKLH GVAMDVDKFA SRLWGDVYYH PDTRVFNTSP PVGGGERAFV QFILEPLYKI YSQVIGEHKK SVETTLAELG 401: VTLSNSAYKL NVRPLLRLAC SSVFGSASGF TDMLVKHIPS PREAAARKVD HSYTGTKDSP IYESMVECDP SGPLMVNVTK LYPKSDTSVF DVFGRVYSGR 501: LQTGQSVRVL GEGYSPEDEE DMTIKEVTKL WIYQARYRIP VSSAPPGSWV LIEGVDASIM KTATLCNASY DEDVYIFRAL KFNTLPVVKT ATEPLNPSEL 601: PKMVEGLRKI SKSYPLAITK VEESGEHTIL GTGELYLDSI IKDLRELYSE VQVKVADPVV SFCETVVESS SMKCFAETPN KKNKLTMIAE PLDRGLAEDI 701: ENGVVSIDWN RVQLGDFFRT KYDWDLLAAR SIWAFGPDKQ GTNILLDDTL PTEVDRNLMM GVKDSIVQGF QWGAREGPLC DEPIRNVKFK IVDARIAPEP 801: LHRGSGQMIP TARRVAYSAF LMATPRLMEP VYYVEIQTPI DCVTAIYTVL SRRRGYVTSD VPQPGTPAYI VKAFLPVIES FGFETDLRYH TQGQAFCLSV 901: FDHWAIVPGD PLDKAIQLRP LEPAPIQHLA REFMVKTRRR KGMSEDVSGN KFFDEAMMVE LAQQTGDLHL QMI |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)