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AT5G25020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.920
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1336)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1336); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT5G24990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G25020EnsemblPlants:AT5G25020.1entrez:832572
GeneID:832572Gramene:AT5G25020.1hmmpanther:PTHR12136hmmpanther:PTHR12136:SF38
InParanoid:F4KIL6InterPro:IPR009769iPTMnet:F4KIL6KEGG:ath:AT5G25020
OMA:EWITETTPaxDb:F4KIL6Pfam:PF07059Proteomes:UP000006548
RefSeq:NP_197884.1TAIR:AT5G25020UniGene:At.47562UniProt:F4KIL6
Coordinates (TAIR10) chr5:+:8618567..8619465
Molecular Weight (calculated) 29740.90 Da
IEP (calculated) 5.62
GRAVY (calculated) -0.38
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MNQTETTTDD DNNNSKPAET ESTTTAPEWI TETINGGSFC HVDLETGTNG WASPPGNVFS LRSNNYFTPT KQKSPGGDYL LSLAAVDWLK STTKKLDHIL
101: SRPDNRVIHA LKTSQSSSFI FAVNFQVPGK EHYNLRFKIV SNVVKGPWVV KAAAGKFGAF VAGKAMKCSY HRGDNYFEVD VDISSSAIMT ALIRFMLGYV
201: TYLMVDIGFV VEAQTEEELP ERLIGGARIC HMELSSAFVI YDDVDGKKSS QQRRRMMGAA EGNHSEDED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)