AT5G24810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.500 plasma membrane 0.500 ASURE: golgi,plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC1 family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ABC1 family protein; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Beta-lactamase-type transpeptidase fold (InterPro:IPR012338), Beta-lactamase-related (InterPro:IPR001466), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8516902..8522616 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 112216.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.84 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1009 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRNSRFRGIN SGSFQNKRWW SLVLDSLLSF FVRLSEIIKR FFHKFVSMGL GNIYRRRMKV FSIAILIYLD YKGVQQKEKW IKKSKVPALW DKAHDRNAKR 0101: VLNLIVELEG LWVKLGQYLS TRADVLPQAY ISLLTQLQDS LPPRPLQEVC RTIERELGNS MDVLFTDFVD EPLATASIAQ VHRATLANGQ DVVVKVQHDG 0201: IRAIILEDLK NAKSIVDWIA WAEPQYNFNP MIDEWCKEAP RELDFNIEAE NTRTVSGNLG CKKTNDEVRS ANRVDVLIPD IIQSSESVLI LEYMDGVRLN 0301: DVESLDAFGV DKQKIVEEIT RAYAHQIFVD GFFNGDPHPG NFLVSKEPQH RPILLDFGLS KKISHSLKQA LAKMFLASAE GDQVALLSAF AEMGLKLRLD 0401: MPDQAMSVAG LFFRSSTPSS EAMKTFKTLN DQRVQNMKVI QEKMQLNQKE VKRFNPIDAF PGDIVIFARV INLLRGLSST MNVRIVYLDI MRPFAESVLL 0501: GSISRGPTVD AHWIHDSPIH SDVESKVRKL LAELGSIQKI LGIQVCAYKD GKVIIDTAAG VLGRYDPRPV QPDSLFPVFS VTKGVTAGMI HWLVDKRKLQ 0601: LDQTVANMWP GFGSNGKDTI KVHHVLNHTS GMQNSFDPVG ENPLLICDWD ECLKRIANSS PETEPGSQQS YHYLTFGWLC GGILEYASGK KLQEILEESI 0701: VKPLNIDGEL YIGIPPGVES RLATLTFDTD EMSKLSSIAS QPELPSTFQP DKIIQMATNL PVLFNTLNVR RAIIPAANGH CSARALARYY ATLADGGLVP 0801: PPHSSLSQPP LGSHTHVPKF TSLKDTTKKK KGKEMAATEK GKSKDHQERK LYDEKQFMSA SSSRESNTES LARLVDTNSS AGKTEINSDD HQHDIHNMFS 0901: NPRIHDAFMG AGDYSGLVVP DGKFGLGFKR AISQDGSLVG FGHSGLGGST GFCDINNRFS IAVTLNKMSM GGVTANIVKL VCSELNIPLP KDFATDIGAD 1001: SQMGTPLIN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)