AT5G24670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cytidine/deoxycytidylate deaminase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); Has 3111 Blast hits to 3096 proteins in 1409 species: Archae - 0; Bacteria - 2358; Metazoa - 102; Fungi - 142; Plants - 42; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8448880..8451046 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45100.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.99 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||
| Length | 400 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSDAWEIIH IPEKPSLSPD HQPTVKVYAS LIKPRFANTI VRHLCKIAPL EDLRHVKRVK KKILPDCGET QLTVILCLAP EHNDQLSDMP PDVQRLVDPY 101: ELSPFITQVC KYAAVSKEEW EEQSKIWPTS FHPPTYNIDG IGGFSEEETQ SICKFMRVVI DMAVSGHTPL VNAAVIVDPS VRRIIASETD QVYASSAPRD 201: MTSAETRPFE ETGEICLNDT LEKQNGSLSA LSCLNPWQWS LQPHDTENCS QWHPLRHASM VAIESSSARD RNLFPNPSKI FDQDHVPPSN TDSPAKKQKT 301: SSQSPDVQND SREETVRDPS MERPYLCTGY DIFLLLEPCT MCAMALVHQR IKRIFYAFPN TTAGGLGSVH RLQGEKSLNH HYAVFRVLLP DDALRQMTTV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)