AT5G24480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.918 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Beta-galactosidase related protein | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Beta-galactosidase related protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT5G01080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8363831..8365036 | ||||||||||||||||
| Molecular Weight (calculated) | 39473.20 Da | ||||||||||||||||
| IEP (calculated) | 9.18 | ||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||
| Length | 350 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLWLFSQSSR PHFQSIHFFD CSLTSDRGQR SWPATLPSPQ PLSASTFLKC SPTEQPHLFR SKSDPISSIT TLTSDLFYVC TSSLMISVPT TSLSFHRRSY 101: LSPQIRRTIT VLCSTEALLR FLLMGHSCLS PLTNSRPIPK SNDPSPLMTW PGPSKAFPQN HRCLIHVAKC LKMIDIMIPS LRSDDYRSFF KCSSPIHLLI 201: DFILEIISYT LGTTLESKSL MKNGIMIPSP RNGGYQIFSN HFYPLILNLE PQTKPEKTFT SHESPPLVLT SLLRFVPASH VAKDTFSKSK DQVFLIVTTP 301: KLPDLVAKVS MIHHEVICGL LFDCFCLCSS MDYKSYRPFL VVNSSSLKLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)