AT5G24290.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 ASURE: vacuole What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vacuolar iron transporter (VIT) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Vacuolar iron transporter (VIT) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: vacuolar iron transporter (VIT) family protein (TAIR:AT4G27860.2); Has 4075 Blast hits to 2852 proteins in 313 species: Archae - 11; Bacteria - 241; Metazoa - 1160; Fungi - 321; Plants - 224; Viruses - 57; Other Eukaryotes - 2061 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8263271..8265618 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59449.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.28 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||
| Length | 534 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKSNQPVHV TLSELKDGDK EIVDAEFLVD LLESYRFGKD NVPAREFRSK AAATAPAPVN TTEIELEEDN DGSQAQDPIV LESTVSETGS NEESETGSNE 101: ENGNNWLESS STNLPNVENK RQRNGEDCEI EEEEENNERS LSDSEEKSNL EKLLGTQENY ELGNEDEEKN ERSSSDSEEK SNLENLLATQ ENYELYCPSC 201: STCITRNVVL KKRKRGKHVN SSLDLKPDIP VVEPDEPSDI EEMESPVKVY VPETRIEDDQ EDKEGTIFTC LVCDLKYFIR LGTKFLQLDY IRGKPVEKSV 301: EEYIDVRKSI NTTQSPPQIQ PDGERFAIEL LKSTVYGGLT ETITSLGVVS SASASGSSTM NILALAVANL AGGLIVLAQN FQDLRNSSDQ EKDRYEELLG 401: RRTKSRIHIL VAVMSYIFFG LIPPLVYAFS FYETGIKNYK LISVFLGSLV CVILLGSIKV YVRKPTNSCG STKAYLKSAA YYTSIVVASC GISYVVGDIM 501: GEYIEKLSLV GLDQISITSP CYGIKPEECR FTSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)