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AT5G24290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vacuolar iron transporter (VIT) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar iron transporter (VIT) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: vacuolar iron transporter (VIT) family protein (TAIR:AT4G27860.1); Has 11871 Blast hits to 4498 proteins in 431 species: Archae - 22; Bacteria - 6501; Metazoa - 1569; Fungi - 486; Plants - 257; Viruses - 63; Other Eukaryotes - 2973 (source: NCBI BLink).
Protein Annotations
BioGrid:17771eggNOG:ENOG410JS4BeggNOG:ENOG4111A2UEMBL:AB006701
EMBL:AK228214EMBL:AK317370EMBL:AY086399EMBL:BT008326
EMBL:CP002688EnsemblPlants:AT5G24290EnsemblPlants:AT5G24290.1EnsemblPlants:AT5G24290.2
entrez:832496ExpressionAtlas:F4KFS7GeneID:832496Genevisible:F4KFS7
GO:GO:0005381GO:GO:0005384GO:GO:0005783GO:GO:0005789
GO:GO:0006880GO:GO:0010168GO:GO:0016020GO:GO:0016021
GO:GO:0030026GO:GO:0034755GO:GO:0071281GO:GO:0071421
hmmpanther:PTHR31851hmmpanther:PTHR31851:SF16HOGENOM:HOG000152572InParanoid:F4KFS7
IntAct:F4KFS7KEGG:ath:AT5G24290OMA:KSAAYYTPaxDb:F4KFS7
Pfam:F4KFS7PRIDE:F4KFS7PRO:PR:F4KFS7ProteinModelPortal:F4KFS7
Proteomes:UP000006548RefSeq:NP_568441.2RefSeq:NP_851067.1STRING:3702.AT5G24290.1
TAIR:AT5G24290TMHMM:TMhelixUniGene:At.8777UniProt:F4KFS7
Coordinates (TAIR10) chr5:-:8263271..8265618
Molecular Weight (calculated) 61049.20 Da
IEP (calculated) 4.25
GRAVY (calculated) -0.45
Length 550 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKSNQPVHV TLSELKDGDK EIVDAEFLVD LLESYRFGKD NVPAREFRSK AAATAPAPVN TTEIELEEDN DGSQAQGNNS VSESTSSLFS DSDPIVLEST
101: VSETGSNEES ETGSNEENGN NWLESSSTNL PNVENKRQRN GEDCEIEEEE ENNERSLSDS EEKSNLEKLL GTQENYELGN EDEEKNERSS SDSEEKSNLE
201: NLLATQENYE LYCPSCSTCI TRNVVLKKRK RGKHVNSSLD LKPDIPVVEP DEPSDIEEME SPVKVYVPET RIEDDQEDKE GTIFTCLVCD LKYFIRLGTK
301: FLQLDYIRGK PVEKSVEEYI DVRKSINTTQ SPPQIQPDGE RFAIELLKST VYGGLTETIT SLGVVSSASA SGSSTMNILA LAVANLAGGL IVLAQNFQDL
401: RNSSDQEKDR YEELLGRRTK SRIHILVAVM SYIFFGLIPP LVYAFSFYET GIKNYKLISV FLGSLVCVIL LGSIKVYVRK PTNSCGSTKA YLKSAAYYTS
501: IVVASCGISY VVGDIMGEYI EKLSLVGLDQ ISITSPCYGI KPEECRFTSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)